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Rename columns from a GInteractions with tidyverse-like rename

Source: R/rename.R
dplyr-rename.Rd

Rename columns from a GInteractions with tidyverse-like rename

Usage

# S3 method for class 'GInteractions'
rename(.data, ...)

Arguments

.data

a GInteractions object

...

Use new_name = old_name to rename selected variables.

Value

a GInteractions object.

Examples

gi <- read.table(text = "
chr1 10 20 chr1 50 51
chr1 10 50 chr2 30 40",
col.names = c("chr1", "start1", "end1", "chr2", "start2", "end2")) |> 
  as_ginteractions(seqnames1 = chr1, seqnames2 = chr2) |> 
  mutate(type = c('cis', 'trans'), score = runif(2))
  
####################################################################
# 1. Rename metadata columns to a GInteractions object
####################################################################

gi |> rename(interaction_type = type, GC = score)
#> GInteractions object with 2 interactions and 2 metadata columns:
#>       seqnames1   ranges1 strand1     seqnames2   ranges2 strand2 |
#>           <Rle> <IRanges>   <Rle>         <Rle> <IRanges>   <Rle> |
#>   [1]      chr1     10-20       * ---      chr1     50-51       * |
#>   [2]      chr1     10-50       * ---      chr2     30-40       * |
#>       interaction_type        GC
#>            <character> <numeric>
#>   [1]              cis  0.479025
#>   [2]            trans  0.432171
#>   -------
#>   regions: 4 ranges and 0 metadata columns
#>   seqinfo: 2 sequences from an unspecified genome; no seqlengths