tidy for Seurat
tidy(object)
# S3 method for class 'SummarizedExperiment'
tidy(object)
# S3 method for class 'RangedSummarizedExperiment'
tidy(object)A tidyseurat object.
Hutchison, W.J., Keyes, T.J., The tidyomics Consortium. et al. The tidyomics ecosystem: enhancing omic data analyses. Nat Methods 21, 1166–1170 (2024). https://doi.org/10.1038/s41592-024-02299-2
Hutchison, W.J., Keyes, T.J., The tidyomics Consortium. et al. The tidyomics ecosystem: enhancing omic data analyses. Nat Methods 21, 1166–1170 (2024). https://doi.org/10.1038/s41592-024-02299-2
Hutchison, W.J., Keyes, T.J., The tidyomics Consortium. et al. The tidyomics ecosystem: enhancing omic data analyses. Nat Methods 21, 1166–1170 (2024). https://doi.org/10.1038/s41592-024-02299-2
data(pasilla)
pasilla %>% tidy()
#> Warning: `tidy()` was deprecated in tidySummarizedExperiment 1.1.1.
#> ℹ tidySummarizedExperiment says: tidy() is not needed anymore.
#> class: SummarizedExperiment
#> dim: 14599 7
#> metadata(0):
#> assays(1): counts
#> rownames(14599): FBgn0000003 FBgn0000008 ... FBgn0261574 FBgn0261575
#> rowData names(0):
#> colnames(7): untrt1 untrt2 ... trt2 trt3
#> colData names(2): condition type