tidy for Seurat
tidy_(x, ...)
# S3 method for class 'SummarizedExperiment'
tidy(x, ...)
# S3 method for class 'RangedSummarizedExperiment'
tidy(x, ...)A tidyseurat object.
Hutchison, W.J., Keyes, T.J., The tidyomics Consortium. et al. The tidyomics ecosystem: enhancing omic data analyses. Nat Methods 21, 1166–1170 (2024). https://doi.org/10.1038/s41592-024-02299-2
Hutchison, W.J., Keyes, T.J., The tidyomics Consortium. et al. The tidyomics ecosystem: enhancing omic data analyses. Nat Methods 21, 1166–1170 (2024). https://doi.org/10.1038/s41592-024-02299-2
Hutchison, W.J., Keyes, T.J., The tidyomics Consortium. et al. The tidyomics ecosystem: enhancing omic data analyses. Nat Methods 21, 1166–1170 (2024). https://doi.org/10.1038/s41592-024-02299-2
data(pasilla)
pasilla %>% tidy()
#> Warning: `tidy()` was deprecated in tidySummarizedExperiment 1.1.1.
#> ℹ tidySummarizedExperiment says: tidy() is not needed anymore.
#> # A SummarizedExperiment-tibble abstraction: Features=14599 | Samples=7 |
#> # Assays=counts
#> # |------ COVARIATES ----|
#> .feature .sample | counts | condition type |
#> <chr> <chr> | <chr> | <chr> <chr> |
#> 1 FBgn0000003 untrt1 | 0 | untreated single_end |
#> 2 FBgn0000008 untrt1 | 92 | untreated single_end |
#> 3 FBgn0000014 untrt1 | 5 | untreated single_end |
#> 4 FBgn0000015 untrt1 | 0 | untreated single_end |
#> 5 FBgn0000017 untrt1 | 4664 | untreated single_end |
#> -------- ------- - ------ - --------- ---- -
#> 102189 FBgn0261571 trt3 | 0 | treated paired_end |
#> 102190 FBgn0261572 trt3 | 3 | treated paired_end |
#> 102191 FBgn0261573 trt3 | 1908 | treated paired_end |
#> 102192 FBgn0261574 trt3 | 3047 | treated paired_end |
#> 102193 FBgn0261575 trt3 | 4 | treated paired_end |