The Tidyomics Blog – tidyomicsBlog

Sixteen tissue microarray cores in four rows on one slide. M2 macrophages are bright magenta, PD-L1-positive antigen-presenting cells are bright yellow, other immune cells are bright green, and epithelium is cyan.

Modelling cell-type proportions in repeated-measures designs with sccomp: a TMA case study

Mixed-effect models with random effects for tissue microarrays and other complex designs

Cell proportions are often measured more than once in the same donor, across tumour cores or serial biopsies. The resulting observations are correlated. Averaging the cores…

Stefano Mangiola

Slicing in tidyomics

How to use dplyr-style slice operations on omics data objects in the tidyomics project.

Outcomes from EuroBioC2026 Tidyomics Hackathon

Maintaining and refining the Tidyomics ecosystem: enhancing core packages and interoperability for EuroBioC2026

EuroBioC2026 Tidyomics Hackathon

An invitation to join the Tidyomics community hackathon at EuroBioC2026 in Turku, Finland.

Stefano Mangiola

Speeding up tidySummarizedExperiment through query optimisation and the plyxp backend

Performance optimisation of tidySummarizedExperiment and related benchmark.

Stefano Mangiola

Omicslog

Providing logging capabilities for SummarizedExperiment objects.

The Tidyomics Ecosystem

An introduction to the tidyomics ecosystem, including principles, core packages, publications, and community resources for tidy omic analysis.

Stefano Mangiola, tidyomics community

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